Version 1.2
Database System
  • About the System
  • Search MLST Database
  • Search RFLP Database
  • Data Submission
  • Online Tools
    • Downloads
  • Allele Sequences
  • Allele Profiles
  • Concatenated Sequences
  • Reference Sequences
    • Publications
  • MLST Protocols
  • EcMLST
    • Online Tools
    § AlignRef: View sequence alignment of user input allele sequences or allele consensus sequences against the corresponding K12 reference sequence
    § SeqTrim: Trim user input allele consensus sequences to alignment length
    § SeqCon: Get concatenated sequences for selected sequence types/isolates in batch as an interleaved MEGA file
    § BatchProfile: Get allele profiles for selected sequence types/isolates in batch as a text file
    § In Silico RFLP: Predict digestion patterns and fragement sizes of single, double, or multiple digestions of user input sequences by any or any combinations of 532 restriction enzymes
    § Simple Genome Browser: Obtain nucleotide sequences based on sequence positions in the following genomes: Escherichia coli, Mycobacterium tuberculosis, Streptococcus agalactiae, S. mutans, S. pneumoniae, and S. pyogenes
    Home About the System MLST Database RFLP Database Submission Tools Downloads Publications News Contact Us
    Operated by the STEC Center at Michigan State University
    National Institutes of Health (NIH) National Institute of Allergy and Infectious Diseases (NIAID) Food and Waterborne Diseases Integrated Research Network (FWD IRN) Microbiology Research Unit (MRU) Reference Center to Facilitate the Study of Shiga Toxin-Producing Escherichia Coli