Happlot - Haplotype diagram plotting.
PS Find - Find list of polymorphic sites.
PS Win - Sliding window of site differences.
Recut - Predicting restriction enzmyme digests (4 and 6 cutters).
Seq Trim - Trim vectors from sequences.
Stephens - Analysis of clustered polymorphisms.
CATSEQ - MLST management tool.
UpdateMega - Interleaved MEGA file management tool.
SNPT - Single Nucleotide Polymorphism Typing data analysis tool.
readNew - Tool that determines the allele at each locus and then determines the corresponding sequence type.